5.5.2.0.7...........Alkylresorcinol Synthases: Sequences from Sorghum bicolor and Oryza sativa

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Indexes: [All Pages] [Type III PKS] [Catharanthus roseus] Inhaltsverzeichnisse: [Alle Seiten] [Typ III PKS] [Catharanthus roseus]

(Last modification: 31. January 2010)

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SbPKS3 (0_1848)

LOCUS XP_002462898 404 aa linear PLN 13-JUL-2009

DEFINITION hypothetical protein SORBIDRAFT_02g034030 [Sorghum bicolor].

ACCESSION XP_002462898

VERSION XP_002462898.1 GI:242050308

DBSOURCE REFSEQ: accession XM_002462853.1

KEYWORDS .

SOURCE Sorghum bicolor (sorghum)

ORGANISM Sorghum bicolor

Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;

Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACCAD

clade; Panicoideae; Andropogoneae; Sorghum.

REFERENCE 1 (residues 1 to 404)

AUTHORS Paterson,A.H., Bowers,J.E., Bruggmann,R., Dubchak,I., Grimwood,J.,

Gundlach,H., Haberer,G., Hellsten,U., Mitros,T., Poliakov,A.,

Schmutz,J., Spannagl,M., Tang,H., Wang,X., Wicker,T., Bharti,A.K.,

Chapman,J., Feltus,F.A., Gowik,U., Grigoriev,I.V., Lyons,E.,

Maher,C.A., Martis,M., Narechania,A., Otillar,R.P., Penning,B.W.,

Salamov,A.A., Wang,Y., Zhang,L., Carpita,N.C., Freeling,M.,

Gingle,A.R., Hash,C.T., Keller,B., Klein,P., Kresovich,S.,

McCann,M.C., Ming,R., Peterson,D.G., Mehboob-ur-Rahman, Ware,D.,

Westhoff,P., Mayer,K.F., Messing,J. and Rokhsar,D.S.

TITLE The Sorghum bicolor genome and the diversification of grasses

JOURNAL Nature 457 (7229), 551-556 (2009)

PUBMED 19189423

REFERENCE 2 (residues 1 to 404)

AUTHORS Paterson,A.H., Bowers,J.E., Bruggmann,R., Dubchak,I., Grimwood,J.,

Gundlach,H., Haberer,G., Hellsten,U., Mitros,T., Poliakov,A.,

Schmutz,J., Spannagl,M., Tang,H., Wang,X., Wicker,T., Bharti,A.K.,

Chapman,J., Feltus,F.A., Gowik,U., Grigoriev,I.V., Zhou,K.,

Lucas,S., Glavina del Rio,T., Tice,H., Bruce,D., Pitluck,S.,

Lyons,E., Maher,C.A., Martis,M., Narechania,A., Otillar,R.P.,

Penning,B.W., Salamov,A.A., Wang,Y., Zhang,L., Carpita,N.C.,

Freeling,M., Gingle,A.R., Hash,C.T., Keller,B., Klein,P.,

Kresovich,S., McCann,M.C., Ming,R., Peterson,D.G.,

Mehboob-ur-Rahman, Ware,D., Westhoff,P., Mayer,K.F., Messing,J. and

Rokhsar,D.S.

CONSRTM Sorghum Consortium

TITLE Direct Submission

JOURNAL Submitted (27-SEP-2008) US DOE Joint Genome Institute, 2800

Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA

COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final

NCBI review. The reference sequence was derived from EER99419.

Method: conceptual translation.

FEATURES Location/Qualifiers

source 1..404

/organism="Sorghum bicolor"

/cultivar="BTx623"

/db_xref="taxon:4558"

/chromosome="2"

Protein 1..404

/product="hypothetical protein"

/calculated_mol_wt=43284

Region 22..390

/region_name="CHS_like"

/note="Chalcone and stilbene synthases; plant-specific

polyketide synthases (PKS) and related enzymes, also

called type III PKSs. PKS generate an array of different

products, dependent on the nature of the starter molecule.

They share a common chemical...; cd00831"

/db_xref="CDD:29418"

Region 23..390

/region_name="BcsA"

/note="Predicted naringenin-chalcone synthase [Secondary

metabolites biosynthesis, transport, and catabolism];

COG3424"

/db_xref="CDD:33230"

Site order(61,64..65,221,270,315..317)

/site_type="other"

/note="malonyl-CoA binding site"

/db_xref="CDD:29418"

Site order(97..98,101,142..143,148,152,158..164,168..169,

178..179,182,185..187,247,249..251,261..264,384)

/site_type="other"

/note="dimer interface"

/db_xref="CDD:29418"

Site order(170,312,345)

/site_type="active"

/db_xref="CDD:29418"

Site order(198..200,222,259..261,269..270,347,381)

/site_type="other"

/note="product binding site"

/db_xref="CDD:29418"

CDS 1..404

/locus_tag="SORBIDRAFT_02g034030"

/gene_synonym="Sb02g034030"

/coded_by="XM_002462853.1:66..1280"

/note="similar to Putative chalcone synthase"

/db_xref="InterPro:IPR001099"

/db_xref="JGIDB:Sorbi1_5051705"

/db_xref="GeneID:8080716"

ORIGIN

1 mgssaapanv reicraqrad gpaavlaigt anpancvpqd efpdfyfrat ksdhltglke

61 kfkrvcqklg vqkrylhhte ellsahpefl dhsspsldar ldivktavpe laaqasrkai

121 aewgrpaadi thlvvttnsg ahipgvdfrl vpllglrptv rrtmlylngc fagaaalrla

181 rdlaennsga rvlvvcaeit vllfngpeeg cfqtlvnqgl fgdgagaviv gadplaaerp

241 lfeivsaaqa iipesedvit mhltrggygg nistrqvpvl igdnierclt dafaplggvi

301 gaewndlfwd vhpgssaild qvdavlklkp eklaasrrvl seygnmfgvt vifvldelrr

361 rmekgeeega pewgvmvafg pgltvetmvl hrsgtpaekk laea

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SbARS1:

LOCUS XP_002449744 404 aa linear PLN 13-JUL-2009

DEFINITION SbARS1, hypothetical protein SORBIDRAFT_05g022500 [Sorghum bicolor].

ACCESSION XP_002449744

VERSION XP_002449744.1 GI:242068935

DBSOURCE REFSEQ: accession XM_002449699.1

KEYWORDS .

SOURCE Sorghum bicolor (sorghum)

ORGANISM Sorghum bicolor

Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;

Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACCAD

clade; Panicoideae; Andropogoneae; Sorghum.

REFERENCE 1 (residues 1 to 404)

AUTHORS Paterson,A.H., Bowers,J.E., Bruggmann,R., Dubchak,I., Grimwood,J.,

Gundlach,H., Haberer,G., Hellsten,U., Mitros,T., Poliakov,A.,

Schmutz,J., Spannagl,M., Tang,H., Wang,X., Wicker,T., Bharti,A.K.,

Chapman,J., Feltus,F.A., Gowik,U., Grigoriev,I.V., Lyons,E.,

Maher,C.A., Martis,M., Narechania,A., Otillar,R.P., Penning,B.W.,

Salamov,A.A., Wang,Y., Zhang,L., Carpita,N.C., Freeling,M.,

Gingle,A.R., Hash,C.T., Keller,B., Klein,P., Kresovich,S.,

McCann,M.C., Ming,R., Peterson,D.G., Mehboob-ur-Rahman, Ware,D.,

Westhoff,P., Mayer,K.F., Messing,J. and Rokhsar,D.S.

TITLE The Sorghum bicolor genome and the diversification of grasses

JOURNAL Nature 457 (7229), 551-556 (2009)

PUBMED 19189423

REFERENCE 2 (residues 1 to 404)

AUTHORS Paterson,A.H., Bowers,J.E., Bruggmann,R., Dubchak,I., Grimwood,J.,

Gundlach,H., Haberer,G., Hellsten,U., Mitros,T., Poliakov,A.,

Schmutz,J., Spannagl,M., Tang,H., Wang,X., Wicker,T., Bharti,A.K.,

Chapman,J., Feltus,F.A., Gowik,U., Grigoriev,I.V., Zhou,K.,

Lucas,S., Glavina del Rio,T., Tice,H., Bruce,D., Pitluck,S.,

Lyons,E., Maher,C.A., Martis,M., Narechania,A., Otillar,R.P.,

Penning,B.W., Salamov,A.A., Wang,Y., Zhang,L., Carpita,N.C.,

Freeling,M., Gingle,A.R., Hash,C.T., Keller,B., Klein,P.,

Kresovich,S., McCann,M.C., Ming,R., Peterson,D.G.,

Mehboob-ur-Rahman, Ware,D., Westhoff,P., Mayer,K.F., Messing,J. and

Rokhsar,D.S.

CONSRTM Sorghum Consortium

TITLE Direct Submission

JOURNAL Submitted (27-SEP-2008) US DOE Joint Genome Institute, 2800

Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA

COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final

NCBI review. The reference sequence was derived from EES08732.

Method: conceptual translation.

FEATURES Location/Qualifiers

source 1..404

/organism="Sorghum bicolor"

/cultivar="BTx623"

/db_xref="taxon:4558"

/chromosome="5"

Protein 1..404

/product="hypothetical protein"

/calculated_mol_wt=43314

Region 22..393

/region_name="CHS_like"

/note="Chalcone and stilbene synthases; plant-specific

polyketide synthases (PKS) and related enzymes, also

called type III PKSs. PKS generate an array of different

products, dependent on the nature of the starter molecule.

They share a common chemical...; cd00831"

/db_xref="CDD:29418"

Region 23..393

/region_name="BcsA"

/note="Predicted naringenin-chalcone synthase [Secondary

metabolites biosynthesis, transport, and catabolism];

COG3424"

/db_xref="CDD:33230"

Site order(61,64..65,223,274,316..318)

/site_type="other"

/note="malonyl-CoA binding site"

/db_xref="CDD:29418"

Site order(99..100,103,144..145,150,154,160..166,170..171,

180..181,184,187..189,251,253..255,265..268,387)

/site_type="other"

/note="dimer interface"

/db_xref="CDD:29418"

Site order(172,313,346)

/site_type="active"

/db_xref="CDD:29418"

Site order(200..202,224,263..265,273..274,348,384)

/site_type="other"

/note="product binding site"

/db_xref="CDD:29418"

CDS 1..404

/locus_tag="SORBIDRAFT_05g022500"

/gene_synonym="Sb05g022500"

/coded_by="XM_002449699.1:1..1215"

/db_xref="InterPro:IPR001099"

/db_xref="JGIDB:Sorbi1_5040694"

/db_xref="GeneID:8062654"

ORIGIN

1 mgsappaatv qemrraqrad gpaavlaigt anppsimpqd dypdyyfrvt nsehltdlka

61 klsricnhnk sgirqrylhl neellaanpg fidpkrpsld ervemasaav pelaakaaak

121 aiaewgrpat dithlifsty sgarapsgdr rlasllglrp tvsrtilslh gcygggralq

181 lakelaennr garvlvacse ltliafygpe ggcvdniigq tlfgdgagav ivgadpvgap

241 aerplfemvf asqttipete daismqyskc gmeyhlssrv prvlgsnver clvdtfrtlg

301 vsvawndlfw aihpggrail dnieevlrle dgklaasrhv lsefgnmsgt tvifvldelr

361 rrraaaakqg gqapewgvmm afgpgitvet mvlhapsnle legn

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SbARS2

LOCUS XP_002441839 405 aa linear PLN 13-JUL-2009

DEFINITION SbARS2, hypothetical protein SORBIDRAFT_08g003170 [Sorghum bicolor].

ACCESSION XP_002441839

VERSION XP_002441839.1 GI:242082828

DBSOURCE REFSEQ: accession XM_002441794.1

KEYWORDS .

SOURCE Sorghum bicolor (sorghum)

ORGANISM Sorghum bicolor

Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;

Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACCAD

clade; Panicoideae; Andropogoneae; Sorghum.

REFERENCE 1 (residues 1 to 405)

AUTHORS Paterson,A.H., Bowers,J.E., Bruggmann,R., Dubchak,I., Grimwood,J.,

Gundlach,H., Haberer,G., Hellsten,U., Mitros,T., Poliakov,A.,

Schmutz,J., Spannagl,M., Tang,H., Wang,X., Wicker,T., Bharti,A.K.,

Chapman,J., Feltus,F.A., Gowik,U., Grigoriev,I.V., Lyons,E.,

Maher,C.A., Martis,M., Narechania,A., Otillar,R.P., Penning,B.W.,

Salamov,A.A., Wang,Y., Zhang,L., Carpita,N.C., Freeling,M.,

Gingle,A.R., Hash,C.T., Keller,B., Klein,P., Kresovich,S.,

McCann,M.C., Ming,R., Peterson,D.G., Mehboob-ur-Rahman, Ware,D.,

Westhoff,P., Mayer,K.F., Messing,J. and Rokhsar,D.S.

TITLE The Sorghum bicolor genome and the diversification of grasses

JOURNAL Nature 457 (7229), 551-556 (2009)

PUBMED 19189423

REFERENCE 2 (residues 1 to 405)

AUTHORS Paterson,A.H., Bowers,J.E., Bruggmann,R., Dubchak,I., Grimwood,J.,

Gundlach,H., Haberer,G., Hellsten,U., Mitros,T., Poliakov,A.,

Schmutz,J., Spannagl,M., Tang,H., Wang,X., Wicker,T., Bharti,A.K.,

Chapman,J., Feltus,F.A., Gowik,U., Grigoriev,I.V., Zhou,K.,

Lucas,S., Glavina del Rio,T., Tice,H., Bruce,D., Pitluck,S.,

Lyons,E., Maher,C.A., Martis,M., Narechania,A., Otillar,R.P.,

Penning,B.W., Salamov,A.A., Wang,Y., Zhang,L., Carpita,N.C.,

Freeling,M., Gingle,A.R., Hash,C.T., Keller,B., Klein,P.,

Kresovich,S., McCann,M.C., Ming,R., Peterson,D.G.,

Mehboob-ur-Rahman, Ware,D., Westhoff,P., Mayer,K.F., Messing,J. and

Rokhsar,D.S.

CONSRTM Sorghum Consortium

TITLE Direct Submission

JOURNAL Submitted (27-SEP-2008) US DOE Joint Genome Institute, 2800

Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA

COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final

NCBI review. The reference sequence was derived from EES15677.

Method: conceptual translation.

FEATURES Location/Qualifiers

source 1..405

/organism="Sorghum bicolor"

/cultivar="BTx623"

/db_xref="taxon:4558"

/chromosome="8"

Protein 1..405

/product="hypothetical protein"

/calculated_mol_wt=43504

Region 24..394

/region_name="CHS_like"

/note="Chalcone and stilbene synthases; plant-specific

polyketide synthases (PKS) and related enzymes, also

called type III PKSs. PKS generate an array of different

products, dependent on the nature of the starter molecule.

They share a common chemical...; cd00831"

/db_xref="CDD:29418"

Region 25..394

/region_name="BcsA"

/note="Predicted naringenin-chalcone synthase [Secondary

metabolites biosynthesis, transport, and catabolism];

COG3424"

/db_xref="CDD:33230"

Site order(63,66..67,225,275,317..319)

/site_type="other"

/note="malonyl-CoA binding site"

/db_xref="CDD:29418"

Site order(101..102,105,146..147,152,156,162..168,172..173,

182..183,186,189..191,252,254..256,266..269,388)

/site_type="other"

/note="dimer interface"

/db_xref="CDD:29418"

Site order(174,314,347)

/site_type="active"

/db_xref="CDD:29418"

Site order(202..204,264..266,274..275,349,385)

/site_type="other"

/note="product binding site"

/db_xref="CDD:29418"

CDS 1..405

/locus_tag="SORBIDRAFT_08g003170"

/gene_synonym="Sb08g003170"

/coded_by="XM_002441794.1:1..1218"

/db_xref="InterPro:IPR001099"

/db_xref="JGIDB:Sorbi1_5044512"

/db_xref="GeneID:8074891"

ORIGIN

1 mgsmgkalpa tvdeirraqr aegpaavlai gtanpptimp qddypdyyfr vtnsehltdl

61 kaklsricnh nksgirqryl hlneellaan pgfidpkrps ldervemasa avpelaakaa

121 tkaiaewgrp atdithlifs tysgarapsg drrlasllgl rptvsrtiln lhgcygggrs

181 lqlakeiaen nrgarvlvac seltliafyg peggcvdnii gqtlfgdgag avvvgadpda

241 averplfema fatqttipes edaismqysk cgmeyhlssk vprligcnve rslvdtfrtl

301 gvtaawndlf wavhpggrai ldnieevlgl eddklaasrh vlsefgnmsg ttvifvldel

361 rrrraaaakq ggetpewgvl mafgpgitie tivlhtpsnp elegn

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OsARS2

LOCUS NP_920020 399 aa linear PLN 09-NOV-2004

DEFINITION putative chalcone synthase [Oryza sativa (japonica

cultivar-group)].

ACCESSION NP_920020

VERSION NP_920020.1 GI:37531436

DBSOURCE REFSEQ: accession NM_195038.1

KEYWORDS .

SOURCE Oryza sativa (japonica cultivar-group)

ORGANISM Oryza sativa (japonica cultivar-group)

Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;

Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP

clade; Ehrhartoideae; Oryzeae; Oryza.

REFERENCE 1 (residues 1 to 399)

CONSRTM The Rice Chromosome 10 Sequencing Consortium

TITLE In-depth view of structure, activity, and evolution of rice

chromosome 10

JOURNAL Science 300 (5625), 1566-1569 (2003)

PUBMED 12791992

REFERENCE 2 (residues 1 to 399)

AUTHORS Buell,C.R., Wing,R.A., McCombie,W.R., Messing,J. and Yuan,Q.

TITLE Direct Submission

JOURNAL Submitted (05-MAY-2003) The Institute for Genomic Research, 9712

Medical Center Dr, Rockville, MD 20850, USA

COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final

NCBI review. The reference sequence was derived from AAP52307.

Method: conceptual translation.

FEATURES Location/Qualifiers

source 1..399

/organism="Oryza sativa (japonica cultivar-group)"

/db_xref="taxon:39947"

Protein 1..399

/product="putative chalcone synthase"

/calculated_mol_wt=43087

CDS 1..399

/locus_tag="OSJNAb0015J03.16"

/coded_by="NM_195038.1:1..1200"

/db_xref="GeneID:3052057"

ORIGIN

1 mpgaattaav vdsrrsaqra egpatiiaig tanpanivpq dnfadyyfgl tksehltelk

61 dkmkrickks giekryihld eeiirahpei idkhqpslea rveiaaaevp klaesaarka

121 iakwgrpatd ithlifstys gcrapsadlq lasllglrps vsrtilslhg csgggralql

181 akelaennrg arvlvalsel tlvcfstpde skivghglfg dgagaiivga gpfsdgecpl

241 femvaasqtm ipgtehalgm qatstgidfh lsvqvpmlik dniqqslles fqsvgytdpd

301 wnnlfwavhp ggraildnie gklqlqpwkl aasrqvlref gnmsgatiaf vldelchrre

361 kdedesqqhe wgvmlafgpg itietivmrn plarglkqn

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OsARS3

LOCUS NP_001064197 398 aa linear PLN 14-FEB-2008

DEFINITION OsARS3, Os10g0158400 [Oryza sativa (japonica cultivar-group)].

ACCESSION NP_001064197

VERSION NP_001064197.1 GI:115481208

DBSOURCE REFSEQ: accession NM_001070732.1

KEYWORDS .

SOURCE Oryza sativa Japonica Group

ORGANISM Oryza sativa Japonica Group

Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;

Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP

clade; Ehrhartoideae; Oryzeae; Oryza.

REFERENCE 1

AUTHORS Ohyanagi,H., Tanaka,T., Sakai,H., Shigemoto,Y., Yamaguchi,K.,

Habara,T., Fujii,Y., Antonio,B.A., Nagamura,Y., Imanishi,T.,

Ikeo,K., Itoh,T., Gojobori,T. and Sasaki,T.

TITLE The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa

ssp. japonica genome information

JOURNAL Nucleic Acids Res. 34 (DATABASE ISSUE), D741-D744 (2006)

PUBMED 16381971

REFERENCE 2

AUTHORS Matsumoto,T., Wu,J., Kanamori,H., Katayose,Y., Fujisawa,M.,

Namiki,N., Mizuno,H., Yamamoto,K., Antonio,B.A., Baba,T.,

Sakata,K., Nagamura,Y., Aoki,H., Arikawa,K., Arita,K., Bito,T.,

Chiden,Y., Fujitsuka,N., Fukunaka,R., Hamada,M., Harada,C.,

Hayashi,A., Hijishita,S., Honda,M., Hosokawa,S., Ichikawa,Y.,

Idonuma,A., Iijima,M., Ikeda,M., Ikeno,M., Ito,K., Ito,S., Ito,T.,

Ito,Y., Ito,Y., Iwabuchi,A., Kamiya,K., Karasawa,W., Kurita,K.,

Katagiri,S., Kikuta,A., Kobayashi,H., Kobayashi,N., Machita,K.,

Maehara,T., Masukawa,M., Mizubayashi,T., Mukai,Y., Nagasaki,H.,

Nagata,Y., Naito,S., Nakashima,M., Nakama,Y., Nakamichi,Y.,

Nakamura,M., Meguro,A., Negishi,M., Ohta,I., Ohta,T., Okamoto,M.,

Ono,N., Saji,S., Sakaguchi,M., Sakai,K., Shibata,M., Shimokawa,T.,

Song,J., Takazaki,Y., Terasawa,K., Tsugane,M., Tsuji,K., Ueda,S.,

Waki,K., Yamagata,H., Yamamoto,M., Yamamoto,S., Yamane,H.,

Yoshiki,S., Yoshihara,R., Yukawa,K., Zhong,H., Yano,M., Yuan,Q.,

Ouyang,S., Liu,J., Jones,K.M., Gansberger,K., Moffat,K., Hill,J.,

Bera,J., Fadrosh,D., Jin,S., Johri,S., Kim,M., Overton,L.,

Reardon,M., Tsitrin,T., Vuong,H., Weaver,B., Ciecko,A., Tallon,L.,

Jackson,J., Pai,G., Aken,S.V., Utterback,T., Reidmuller,S.,

Feldblyum,T., Hsiao,J., Zismann,V., Iobst,S., de Vazeille,A.R.,

Buell,C.R., Ying,K., Li,Y., Lu,T., Huang,Y., Zhao,Q., Feng,Q.,

Zhang,L., Zhu,J., Weng,Q., Mu,J., Lu,Y., Fan,D., Liu,Y., Guan,J.,

Zhang,Y., Yu,S., Liu,X., Zhang,Y., Hong,G., Han,B., Choisne,N.,

Demange,N., Orjeda,G., Samain,S., Cattolico,L., Pelletier,E.,

Couloux,A., Segurens,B., Wincker,P., D'Hont,A., Scarpelli,C.,

Weissenbach,J., Salanoubat,M., Quetier,F., Yu,Y., Kim,H.R.,

Rambo,T., Currie,J., Collura,K., Luo,M., Yang,T., Ammiraju,J.S.S.,

Engler,F., Soderlund,C., Wing,R.A., Palmer,L.E., de la Bastide,M.,

Spiegel,L., Nascimento,L., Zutavern,T., O'Shaughnessy,A., Dike,S.,

Dedhia,N., Preston,R., Balija,V., McCombie,W.R., Chow,T., Chen,H.,

Chung,M., Chen,C., Shaw,J., Wu,H., Hsiao,K., Chao,Y., Chu,M.,

Cheng,C., Hour,A., Lee,P., Lin,S., Lin,Y., Liou,J., Liu,S.,

Hsing,Y., Raghuvanshi,S., Mohanty,A., Bharti,A.K., Gaur,A.,

Gupta,V., Kumar,D., Ravi,V., Vij,S., Kapur,A., Khurana,P.,

Khurana,P., Khurana,J.P., Tyagi,A.K., Gaikwad,K., Singh,A.,

Dalal,V., Srivastava,S., Dixit,A., Pal,A.K., Ghazi,I.A., Yadav,M.,

Pandit,A., Bhargava,A., Sureshbabu,K., Batra,K., Sharma,T.R.,

Mohapatra,T., Singh,N.K., Messing,J., Nelson,A.B., Fuks,G.,

Kavchok,S., Keizer,G., Linton,E., Llaca,V., Song,R., Tanyolac,B.,

Young,S., Ho-Il,K., Hahn,J.H., Sangsakoo,G., Vanavichit,A., de

Mattos,Luiz.A.T., Zimmer,P.D., Malone,G., Dellagostin,O., de

Oliveira,A.C., Bevan,M., Bancroft,I., Minx,P., Cordum,H.,

Wilson,R., Cheng,Z., Jin,W., Jiang,J., Leong,S.A., Iwama,H.,

Gojobori,T., Itoh,T., Niimura,Y., Fujii,Y., Habara,T., Sakai,H.,

Sato,Y., Wilson,G., Kumar,K., McCouch,S., Juretic,N., Hoen,D.,

Wright,S., Bruskiewich,R., Bureau,T., Miyao,A., Hirochika,H.,

Nishikawa,T., Kadowaki,K., Sugiura,M., Burr,B. and Sasaki,T.

CONSRTM International Rice Genome Sequencing Project

TITLE The map-based sequence of the rice genome

JOURNAL Nature 436 (7052), 793-800 (2005)

PUBMED 16100779

REFERENCE 3

CONSRTM IRGSP(International Rice Genome Sequencing Project)

TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 10

JOURNAL Unpublished

REFERENCE 4

CONSRTM The Rice Annotation Project (RAP)

TITLE Curated Genome Annotation of Oryza sativa ssp. japonica and

Comparative Genome Analysis with Arabidopsis thaliana

JOURNAL Unpublished

REFERENCE 5

CONSRTM The Rice Annotation Project (RAP)

TITLE The First Rice Annotation Project Meeting (RAP1)

JOURNAL Unpublished

REFERENCE 6 (residues 1 to 398)

AUTHORS Sasaki,T.

TITLE Direct Submission

JOURNAL Submitted (25-OCT-2004) Takuji Sasaki, National Institute of

Agrobiological Sciences, Rice Genome Research Program; Kannondai

2-1-2, Tsukuba, Ibaraki 305-8602, Japan

(E-mail:tsasaki@nias.affrc.go.jp, URL:http://rgp.dna.affrc.go.jp/,

Tel:81-298-38-7441, Fax:81-298-38-7468)

COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final

NCBI review. The reference sequence was derived from BAF26111.

FEATURES Location/Qualifiers

source 1..398

/organism="Oryza sativa Japonica Group"

/cultivar="Nipponbare"

/db_xref="taxon:39947"

/chromosome="10"

Protein 1..398

/product="hypothetical protein"

/name="Os10g0158400"

/calculated_mol_wt=43076

Region 22..387

/region_name="CHS_like"

/note="Chalcone and stilbene synthases; plant-specific

polyketide synthases (PKS) and related enzymes, also

called type III PKSs. PKS generate an array of different

products, dependent on the nature of the starter molecule.

They share a common chemical...; cd00831"

/db_xref="CDD:29418"

Region 23..388

/region_name="BcsA"

/note="Predicted naringenin-chalcone synthase [Secondary

metabolites biosynthesis, transport, and catabolism];

COG3424"

/db_xref="CDD:33230"

Site order(61,64..65,218,268,311..313)

/site_type="other"

/note="malonyl-CoA binding site"

/db_xref="CDD:29418"

Site order(97..98,101,142..143,148,152,158..164,168..169,

178..179,182,185..187,245,247..249,259..262,381)

/site_type="other"

/note="dimer interface"

/db_xref="CDD:29418"

Site order(170,308,341)

/site_type="active"

/db_xref="CDD:29418"

Site order(198..200,219,257..259,267..268,343,378)

/site_type="other"

/note="product binding site"

/db_xref="CDD:29418"

CDS 1..398

/gene="Os10g0158400"

/coded_by="NM_001070732.1:1..1197"

/note="Chalcone synthase J (EC 2.3.1.74)

(Naringenin-chalcone synthase J);

ab initio prediction with EST support;

contains InterPro domain(s): IPR001099, IPR011141;

has GO asignment(s): GO:0008415, GO:0009058;

similar to P22928"

/db_xref="GeneID:4348146"

ORIGIN

1 mpgattaaiv dsrrgtqhse gpatilaigt anpenimfqd nfadyyfglt ksehltelke

61 kmkrichksg iekryihlda elisvhpeii dkhlpsletr vdivatevpk laesaarkai

121 aewgrpatdi thlifstysg crapsadlql asllglrpsv srtilslhgc sgggralqla

181 keiaennrga rvliacselt licfstpdes kiighglfgd gagavivgad psvdgecplf

241 emvaasqtmi pgtehalgmq atssgidfhl siqvptlikd nihqcllnaf rsvgntdpnw

301 ndlfwavhpg graildnied klqlhpckla asrqvlseyg nmsgatiafv ldelrrrrek

361 eqdiqqqpew gvllafgpgv tiesivlrnp lsrglken

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OsARS1

LOCUS XP_476153 392 aa linear PLN 09-NOV-2004

DEFINITION putative chalcone synthase [Oryza sativa (japonica

cultivar-group)].

ACCESSION XP_476153

VERSION XP_476153.1 GI:50933251

DBSOURCE REFSEQ: accession XM_476153.1

KEYWORDS .

SOURCE Oryza sativa (japonica cultivar-group)

ORGANISM Oryza sativa (japonica cultivar-group)

Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;

Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP

clade; Ehrhartoideae; Oryzeae; Oryza.

REFERENCE 1 (residues 1 to 392)

CONSRTM The NCBI Genome Assembly Consortium

TITLE Direct Submission

JOURNAL Submitted (01-JUL-2004) National Center for Biotechnology

Information, National Institutes of Health, Bethesda 20894, United

States of America

COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final

NCBI review. The reference sequence was derived from AAT44238.

Method: conceptual translation.

FEATURES Location/Qualifiers

source 1..392

/organism="Oryza sativa (japonica cultivar-group)"

/cultivar="Nipponbare"

/db_xref="taxon:39947"

Protein 1..392

/product="putative chalcone synthase"

/calculated_mol_wt=42513

CDS 1..392

/gene="OSJNBa0074P11.14"

/coded_by="XM_476153.1:1..1179"

/db_xref="GeneID:3068715"

ORIGIN

1 mpgtataavv dsrpctqhae gpaavlaigt anptnivyqd gftdyyfglt esehltelkd

61 kmkrichrsg iekryihlde klirehpeii dkhmpsletr vdivtteipk laesaarkai

121 aewgrpaidi thlifstysg csapsadlkl asllglnpsv srtilslhgc sgggralqla

181 kelaennrda rvliacaelt licfsnpdes kivghglfgd gagaiivgad plvdgerplf

241 emvlasqtti pgtehalgmq ttsngidfhl siqvptlikd nirqcllntf rsvgnmdpnw

301 ndlfwavhpg graildnieg elqlqpakla asrhvlseyg nmsgttiafv ldelrcrrek

361 egdehqqpew gvmlafgpgi tieamvlrnp ls

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